Bootstrap: docker
From: jtduda/python-itk-sitk-ants:0.1.0

%environment
    export LC_ALL=C
    export INPUT_DIR=/data/input
    export OUTPUT_DIR=/data/output

%post
    mkdir -p /data/input /data/output /data/include /opt/repos /opt/scripts /opt/local
    git clone https://github.com/jeffduda/GetYourBrainPipelined.git /opt/src
    cp /opt/src/Example-Registration/*.py /opt/scripts/.
    cp /opt/src/Example-Registration/*.sh /opt/scripts/.
